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breeders’ attention because it may be possible to 
further improve successful hybrids without this 
trait by introducing it. 
“Towards that end we have identified about 
one and a half dozen genes that contribute to the 
re-orientation trait,” he says. “Markers for these 
genes could be used by breeders to add this trait 
to future hybrids. Alternatively, genome editing 
technology could be used to introduce this trait 
into otherwise promising inbred parents of future 
hybrids.”  
For breeders, the value lies in what comes next, 
says ISU Department of Mechanical Engineering 
professor Baskar Ganapathysubramanian. His 
team's framework combines realistic 3D recon­
structions with simulations to evaluate how 
canopy architecture influences light interception 
before large-scale field trials begin.
“The value for breeders,” he explains, “is that 
this approach can help test architectural traits, 
such as leaf orientation, row spacing, plant spac­
ing, leaf angle, curvature and vertical leaf arrange­
ment in a realistic canopy, before doing large field 
experiments.” 
The team published further work using a com­
putational model and optimization framework to 
search for corn canopy architectures that maximize 
light interception. 
“This gives breeders more insight into which 
combinations of architectural traits may be prom­
ising, rather than looking at one trait at a time,” 
Ganapathysubramanian says.
He explains further that using AI to generate 
promising ideotypes — ideal plant architectures for 
breeders to target “emphasizes that AI is becom­
ing a major force multiplier” for breeders. 
“The concept of an ideotype, a target plant 
architecture engineered for optimal performance, 
goes back to C.M. Donald's work in the late 1960s, 
but it has historically been very difficult to opera­
tionalize,” Ganapathysubramanian notes. “Breeders 
can only field-test a handful of architectural traits 
at a time, and the combinatorial design space (leaf 
angle, azimuth, curvature, vertical spacing, plant 
and row spacing and other factors) is enormous.” 
He says AI changes this picture in two ways.
First, Ganapathysubramanian says, “virtual 
fields and canopy simulations let us evaluate thou­
sands of architectural combinations in silico, long 
before any seed goes in the ground. Second, opti­
mization algorithms can search this design space 
efficiently to identify promising ideotypes, rather 
than evaluating one trait at a time.”
Coupled with recent advances in breed­
ing (genomic selection, gene editing and high-
throughput field phenotyping), he says this creates 
a tight loop – AI proposes candidate ideotypes, 
breeders evaluate them and work to realize them 
genetically, and the resulting plants generate new 
data that refines the next round of models.
AI Is Changing 
Corn Breeding in 
Four Ways
Phenotyping 
AI extracts traits 
from millions of field 
images. 
Virtual Fields
Digital crop models 
test thousands of 
plant architectures 
before field trials. 
Trait Discovery
Machine learning 
helps identify genes 
linked to desirable 
characteristics. 
Breeding Decisions 
AI helps breeders 
prioritize which 
combinations to 
advance, reducing 
time and cost.
Researchers reconstruct individual corn plants from 3D point clouds, creating 
digital plant models that can be analyzed for leaf orientation, canopy 
architecture and light interception. PHOTO: NASLA SALEEM, IOWA STATE UNIVERSITY

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